Dr. Shivashankar Nagaraj

Jungfrau , Switzerland

Jungfrau , Switzerland

Contact details

Department of Chemistry and Biomolecular Sciences
Faculty of Science and Engineering
Macquarie University
Sydney NSW 2109 Australia
Phone: +61 (2) 9850 8276

Adademic history

Bachelors in Biochemistry, University of Mysore, India
Masters in Biotechnology, University of Mysore, India

Publications

Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair J. Nisbet and Shoba Ranganathan. In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches. BMC Bioinformatics, 8 Suppl 10: S10

Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser and Shoba Ranganathan. ESTExplorer: an automated assembly and annotation platform to analyse expressed sequence tags (ESTs). Nucleic Acids Research, 2007, Vol. 35, W143–W147

Shivashankar H. Nagaraj, Robin B. Gasser, and Shoba Ranganathan. A hitchhiker’s guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics, 8, 6-21. Impact Factor : 24.4

Shoba Ranganathan, Shivashankar H. Nagaraj, Min Hu, Christina Strube, Thomas Schnieder, Robin B. Gasser. A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus. BMC Genomics ,2007, 8:311

Bronwyn E. Campbell, Shivashankar H. Nagaraj, Min Hu, Weiwei Zhong, Paul W. Sternberg, Enk K. Ong, Alex Loukas, Shoba Ranganathan, Ian Beveridge, Robin B. Gasser. Gender-enriched transcripts in adult Haemonchus contortus (Nematoda) – predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans. International Journal for Parasitology 2007 Jul 26

Bennett J.D. Datu, Robin B. Gasser, Shivashankar H. Nagaraj, Eng K. Ong, Peter O’Donoghue, Russell McInnes, Shoba Ranganathan and Alex Loukas. Transcriptional changes in the third-stage larva of Ancylostoma caninum (Nematoda) following in vitro serumstimulation, employing a suppressive-subtractive hybridisation-based microarray approach. In Press PLOS NTD

Shivashankar H. Nagaraj and Akhilesh Pandey. A novel mode of activating the JAK-STAT signaling pathway.Trends in Biochemical Sciences. 27, 336

Harsha, H.C., Suresh, S., Amanchy, R., Deshpande, N., Shanker, K.,Yatish, A.J., Muthusamy, B., Vrushabendra, B.M., Rashmi, B.P.,Chandrika, K.N., Padma, N., Sharma, S., Badano, J. L., Ramya, M.A., Shivashankar, H.N., Peri, S., Choudhury, D.R., Kavitha, M.P., Saravana,R., Niranjan, V., Gandhi, T.K.B., Ghosh, N., Chandran, S., Menezes, M., Joy, M., Mohan, S. S., Katsanis, N., Deshpande, K.S., Raghothama, C.,Prasad, C.K., and Pandey, A. A manually curated functional annotation of the human X chromosome. Nature Genetics. 37, 331-332

Peri, S., Navarro, J.D., Amanchy R., Kristiansen T.Z., Jonnalagadda C.K., Surendranath V., Niranjan V., Muthusamy B., Gandhi T.K.B., Gronborg M., Ibarrola N., Deshpande N., Shanker K., Shivashankar H.N., Rashmi B.P, Ramya M.A., Zhao, Z., Chandrika K.N., Padma N., Harsha H.C., Yatish A.J., Poovaiah K.M., Menezes M., Choudhury D.R., Suresh S., Ghosh N., Saravana R., Chandran S., Krishna S., Joy M., Khosravi-Far R., Steen H., Tewari M., Ghaffari S., Blobe G.C., Dang C.V., Garcia J.G.N., Pevsner J., Jensen O.N., Roepstorff P.,Chinnaiyan A.M., Hamosh A., Chakravarti A. and Pandey A. Development of Human Protein ReferenceDatabase as an initial platform for approaching systems biology in humans. Genome Research.13, 2363-2371

Peri, S., Navarro, J.D., Kristiansen T.Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T.K.B., Chandrika, K.N., Deshpande, N., Suresh, S., Rashmi, B.P., Shanker, K., Padma, N., Niranjan, V., Harsha, H.C., Talreja, N., Vrushabendra, B.M., Ramya, M.A., Yatish, A.J. Joy, M., Shivashankar, H.N., Kavitha, M.P., Menezes, M., Choudhury, D.,Ghosh, N., Saravana, R., Chandran, S., Mohan, S., Jonnalagadda, C.K., Prasad, C.K., Kumar-Sinha, C., Deshpande, K.S. and Pandey, A. Human Protein Reference Database as a Discovery Resource for Proteomics. Nucleic Acids Research. 32, 497-501

Muthusamy, B., Hanumanthu, G., Reshmi, R., Sriranjini, S., Suresh, S., Rekha, B., Srinivas, D., Karthick, L., Vrushabendra, B. M., Sharma, S., Mishra, G., Rashmi, B. P., Kadekar, S., Chatterjee, P., Mangala, K. S., Shivashankar, H. N., Chandrika, K. N., Deshpande, N., Suresh, M., Kannabiran, N., Niranjan, V., Nalli, A., Prasad, T. S. K., Arun, K. S., Reddy, R., Chandran, S., Vishnupriya, G., Dhar, K., Reshma, S., Raghothama, C., Prasad, C. K., Gandhi, T. K. B., Harsha, H. C., Mohan, S. S., Deshpande, K.S., Sarker, M. and Pandey, A. Plasma Proteome Database as a resource for proteomics research. Proteomics. 2005 Aug; 5(13):3531-6

Detailed CV

Links

ESTExplorer
Expressed Sequence Tags